PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400034841
Common NameLOC102586621
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 581aa    MW: 65316.3 Da    PI: 6.6047
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400034841genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.22e-20447543295
                           EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           +kvl++sdv+++gr+vlpkk ae+h  +++++ ++ + +ed  ++r+W++k+++  ++ks++y+l+ ++ +Fv angL+egDf+v++  
  PGSC0003DMP400034841 447 QKVLKQSDVGNLGRIVLPKKEAESHlpQLETRDGISIAMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVLANGLQEGDFIVIY-- 532
                           79*************************99999*********7778*******99777777777777.********************.. PP

                           SS.SEE..EEE CS
                    B3  86 gr.sefelvvk 95 
                            + ++++++++
  PGSC0003DMP400034841 533 ADiKCGKYLIR 543
                           45588877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-27440558IPR015300DNA-binding pseudobarrel domain
CDDcd100151.21E-34444545No hitNo description
SuperFamilySSF1019368.24E-22445539IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.334446548IPR003340B3 DNA binding domain
SMARTSM010191.3E-18446548IPR003340B3 DNA binding domain
PfamPF023621.5E-16447542IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MKRELNEVYY GVNKEDVHGF ENINMVPTDF DPMDDTDIWL NGNFSNDFTS LQDFPCMSSS  60
SSTSNSLPTE QSDPCSSWAV QKSDGDEQNF DTISDQECLN VMDLIDGDHE FLDPVISFFH  120
SGENQQQKEQ ANDEQVSIFQ GDSELALMFL EWLKQNKDNI SAEDMRSIKL KRSTIESASK  180
RLGSTKEGKK QLLRLILDWV EQHRLQKKQM RVEQSIQNSA PFNFNNPNAC LYNASFPDSS  240
PVMTGPIQGY IGDLYSNGSL FAPPYNQTMS GSATSRSWSP SQFTMATASQ YNPFPDNDST  300
DNVAIPDQPL FSAQYDPYQV FDGNSERLAR LGTCATKEAR KNRMARQRRV PLHHYRHQTQ  360
NQRQISNEKS VMMGGKINNC AMSRANSLGN WVYWPCAAAA PPIAMVPLAD TPQALPMERP  420
AVQSQKHGST DKRQACKTEK NLKFLLQKVL KQSDVGNLGR IVLPKKEAES HLPQLETRDG  480
ISIAMEDIGT SRVWNMKYRF WPNNKSRMYL LENTGDFVLA NGLQEGDFIV IYADIKCGKY  540
LIRGVKVRPN GAKSDSTQPA KKIVRKIAAV DSSPFAQAVR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-374425461105B3 domain-containing transcription factor FUS3
6j9b_D2e-374425461105B3 domain-containing transcription factor FUS3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400034841
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3092180.0AJ309218.2 Solanum tuberosum gene for VP1-ABI3-like protein, exons 1-6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352828.10.0PREDICTED: B3 domain-containing transcription factor ABI3-like
TrEMBLM1BS610.0M1BS61_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000517460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-114B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]