PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400035337
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 158aa    MW: 17758.1 Da    PI: 10.3721
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400035337genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.2e-0910461147
                          HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  PGSC0003DMP400035337 10 QFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 46
                          578899******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.123151IPR017930Myb domain
SuperFamilySSF466891.33E-10850IPR009057Homeodomain-like
CDDcd001671.03E-6947No hitNo description
TIGRFAMsTIGR015572.1E-11950IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.6E-71046IPR009057Homeodomain-like
PfamPF002492.0E-61046IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MFPISFFRRQ FLLGLKKYGK GDWRNISRNF VTTRTPTQVA SHAQKYFIRQ LSGGKDKRRS  60
SIHDITVVNL MESKSTSPED HKSAPSQQTQ QHSKMNGMVK TLCEYNSPNQ ESDITFNSSS  120
GGLMTMPFRG APSYGLEHGM HNIALQGLQF GNYNTMC*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400035337
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363051.11e-107PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-37DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM1BTD01e-115M1BTD0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000524111e-107(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.17e-38MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]