PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400035479
Common NameLOC102595445
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 256aa    MW: 27880.6 Da    PI: 7.5066
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400035479genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-1362108354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++h+e+ErrRR+riN  + +Lr l+P        K++Ka+ L k++ +Ik+L
  PGSC0003DMP400035479  62 KNHSEAERRRRERINGHLGTLRNLIPGT-----NKMDKAALLAKVIGHIKEL 108
                           58*************************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.28159108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-1462112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.54E-462109No hitNo description
PfamPF000101.1E-1062108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-1463109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1165114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.28E-5147214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDFLSSFNGL NEVYGGFQGI IGNGLSSSSS LVLDNESSEL VKAMVKPGGK GDNQEKALIA  60
LKNHSEAERR RRERINGHLG TLRNLIPGTN KMDKAALLAK VIGHIKELRV NAAEATKGVL  120
VPTDIDEVKV EQQPEGSDGA TYSVKASLCC DYKHELISDL RQALDTLPLK TLRAEIATLG  180
SRMVSVFVIT EGNEGNIEDT ERCQLLITSV RQALRSVLDK FYASEEFSSR STLSSKRRRV  240
SFLNSSSSSS LGDFW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772ERRRRE
2235239KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400035479
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348853.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLM1BTP90.0M1BTP9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000526220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA119892123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-32bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]