PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400035529

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 249aa MW: 27747.4 Da PI: 7.7454

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400035529	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.7	6.2e-29	28	87	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGse.....kAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH++Fv+av++LGG++ +AtPk +l+lm++kgLtl+h+kSHLQkYRl PGSC0003DMP400035529 28 KPRLRWTAELHQQFVDAVTKLGGPDslgftEATPKLVLRLMGMKGLTLYHLKSHLQKYRL 87 79******************997444447**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-29	25	87	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.9E-20	28	88	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.3E-14	28	88	IPR009057	Homeodomain-like
Pfam	PF00249	6.0E-9	30	86	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-19	133	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MYNAIDGVGG GESYLYENDG VMMTRDPKPR LRWTAELHQQ FVDAVTKLGG PDSLGFTEAT 60 PKLVLRLMGM KGLTLYHLKS HLQKYRLGQL AKKQNAAEAN KENSGDSSGQ FGLQSSGPST 120 SSLSMNFMQG EVPTTEAVMC HIEVQKRLQE QLQVQQKLQM RIEAQGKYLQ AILDKAQKSL 180 PDNMNSPSAP EATRAHLTAF NSPLSNLMDY TVHGENRDNN IEQKKDMNLY KLKEDSINFD 240 LNSRSSYI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	28	86	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	28	86	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-16	28	86	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	28	86	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	28	86	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	28	86	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	28	86	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	28	86	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	28	86	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	28	86	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	28	86	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	28	86	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400035529

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	2e-65	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006353697.1	1e-171	PREDICTED: myb family transcription factor APL-like isoform X1
Swissprot	C0SVS4	5e-65	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	M1BTU9	0.0	M1BTU9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400052695	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4416	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	5e-43	G2-like family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400035529

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]