PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400035530

Common Name

LOC102589796

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 126aa MW: 13680.6 Da PI: 9.8968

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400035530	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.3	3.6e-33	28	82	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH++Fv+av++LGG++kAtPk +l+lm++kgLtl+h+kSHLQkYRl PGSC0003DMP400035530 28 KPRLRWTAELHQQFVDAVTKLGGPDKATPKLVLRLMGMKGLTLYHLKSHLQKYRL 82 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-32	25	82	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.116	25	85	IPR017930	Myb domain
TIGRFAMs	TIGR01557	4.2E-24	28	83	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.2E-16	28	83	IPR009057	Homeodomain-like
Pfam	PF00249	5.4E-10	30	81	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MYNAIDGVGG GESYLYENDG VMMTRDPKPR LRWTAELHQQ FVDAVTKLGG PDKATPKLVL 60 RLMGMKGLTL YHLKSHLQKY RLGQLAKKQN AAEANKENSG DSSGQFGLQS SGPSTSSLSM 120 NFMQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-21	28	84	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-21	28	84	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-21	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-21	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-21	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-21	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-21	28	84	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-21	28	84	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-21	28	84	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-21	28	84	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-21	28	84	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-21	28	84	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400035530

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	8e-54	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	8e-54	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006353697.1	3e-88	PREDICTED: myb family transcription factor APL-like isoform X1
Swissprot	C0SVS4	1e-43	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	M1BTV0	3e-87	M1BTV0_SOLTU; Uncharacterized protein
TrEMBL	M1BTV1	8e-87	M1BTV1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400052695	4e-76	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	5e-36	G2-like family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400035530
Entrez Gene	102589796

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]