PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400035877
Common NameLOC102583369
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 291aa    MW: 33352.8 Da    PI: 9.75
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400035877genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.6e-17141231199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f+k++++s+v +  +l lp +f+++h  + ++++++ l de+g ++e  +   +k+ +  l++GW+ F+ +++L++gD +vF+l++ ++
  PGSC0003DMP400035877 141 FIKTMVRSHVYSCFWLGLPTRFCQDHL-P-KSTVDVLLVDEEGLEYEALF--IGKRTG--LSGGWRAFALDHKLDDGDALVFELVEPTK 223
                           89*********************9995.3.3789****************..555544..***********************987666 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f  +v ++r+
  PGSC0003DMP400035877 224 F--KVYIVRA 231
                           6..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-22133234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-25135237IPR015300DNA-binding pseudobarrel domain
CDDcd100178.59E-25139230No hitNo description
SMARTSM010197.4E-23141232IPR003340B3 DNA binding domain
PfamPF023622.1E-15141231IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239141232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MANDKTNSYE EVRRQRVLDN KKRFEDLGIL NISKNLSDIT KSEKKSDYKT ELRRVRQKAN  60
DVYMSEPRRS ARARNPVPTY RDEIDLELPS LRKRSKFNSS WASYLARPLE EVKVASYEEK  120
VQALKCAEKL QSNLQSDNPF FIKTMVRSHV YSCFWLGLPT RFCQDHLPKS TVDVLLVDEE  180
GLEYEALFIG KRTGLSGGWR AFALDHKLDD GDALVFELVE PTKFKVYIVR ASQCSSEVDK  240
SSAEKGESEA EETPKSERKK RKNKSEVPTI AKEEVSVVVA SATRRSSRRK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253261PKSERKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400035877
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139570.0BT013957.1 Lycopersicon esculentum clone 132981R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344089.10.0PREDICTED: putative B3 domain-containing protein At5g58280
SwissprotQ9FHB26e-71Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLM1BUK60.0M1BUK6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000531990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125102022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-72B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]