PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400036343
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 154aa    MW: 17419 Da    PI: 9.6441
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400036343genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.6e-057496123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y C+ C+++F++   L  Hi +H
  PGSC0003DMP400036343 74 YICKTCNRVFRSYQALGGHIASH 96
                          89*****************9998 PP
2zf-C2H211.50.00094120142123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ C ++Fs+   L  H r+H
  PGSC0003DMP400036343 120 HECSVCYRVFSSGQALGGHKRSH 142
                           78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.7E-117498IPR007087Zinc finger, C2H2
PROSITE profilePS501579.51574101IPR007087Zinc finger, C2H2
SMARTSM003550.0227496IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.77E-874142No hitNo description
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
PfamPF139122.2E-13120142IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473120143IPR007087Zinc finger, C2H2
SMARTSM003550.56120142IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MYATAGHVPS SSEPISSISD MSQEEDVAYC LMMLSRDKWT KKRIEVIEDD DEEEEERKNF  60
RVVKMKKTRT RGKYICKTCN RVFRSYQALG GHIASHKKIK VVTSETSKMV ETAKNEVKIH  120
ECSVCYRVFS SGQALGGHKR SHAIASRNSV LLK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400036343
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-175HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244653.12e-52PREDICTED: LOW QUALITY PROTEIN: zinc finger protein ZAT9-like
SwissprotQ9M2024e-39ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLM1BVN41e-109M1BVN4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000539451e-110(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-38C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]