PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400036612

Common Name

LOC102600275

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YA

Protein Properties

Length: 118aa MW: 13053.8 Da PI: 10.4299

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400036612	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105.4	5e-33	22	78	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VNaKQy++Il+RRq+Rak+++ekkl k+rkpylheSRh hAl+R+Rg+gGrF PGSC0003DMP400036612 22 DEPVFVNAKQYHGILRRRQSRAKADSEKKL-LKARKPYLHESRHLHALKRARGCGGRF 78 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.9E-35	20	81	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.134	21	81	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.5E-27	23	78	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.8E-23	24	46	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.8E-23	55	78	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MVHVQLMGIQ QAGVPLPSDA IDEPVFVNAK QYHGILRRRQ SRAKADSEKK LLKARKPYLH 60 ESRHLHALKR ARGCGGRFLT AKETDNQQKQ DESGDKSHVN INLESGKDKV ASSENAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-24	21	91	1	71	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400036612

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013370	0.0	BT013370.1 Lycopersicon esculentum clone 135390R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006353014.1	5e-82	PREDICTED: nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_006353015.1	5e-82	PREDICTED: nuclear transcription factor Y subunit A-7 isoform X2
Swissprot	Q84JP1	1e-49	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	M1BWA7	1e-80	M1BWA7_SOLTU; Uncharacterized protein
TrEMBL	M1BWA8	5e-81	M1BWA8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400054416	2e-81	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	6e-52	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400036612
Entrez Gene	102600275

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]