PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400036616

Common Name

LOC102601513

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 835aa MW: 91868.9 Da PI: 6.3799

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400036616	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.3e-18	5	63	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++p+ +r +L +++ +++ +q+kvWFqNrR +ek+ PGSC0003DMP400036616 5 KYVRYTPEQVEALERVYAECPKPTSLKRHQLIRECsilsNIDPKQIKVWFQNRRCREKQ 63 6789*****************************************************97 PP
2	bZIP_1	22.1	3.3e-07	57	98	18	59
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 rr+R++ ++e +L++ +L+a Nk L +e+++l+k+v+ l PGSC0003DMP400036616 57 RRCREKQRKEASHLQTVNRKLTAMNKLLMEENDRLQKHVSHL 98 9*************************************9977 PP
3	START	171	7.7e-54	154	360	2	203
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 +aee+++e++ ka+ ++ Wv++ +++g+e++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++ ++l+vi +g PGSC0003DMP400036616 154 IAEETLTEFLGKATGTAVDWVQMIGMKPGPESIGIVAVSRNCNGVAARACGLVSLEPM-KVAEILKDRPSWYRDCRCLDILNVIPTGng 241 6899****************************************************.8888888888**************** PP EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173 g+++l++ +++a+++l+p Rdf+++Ry+ +l++g++vi+++S++s++ p s+vRa++lpSg+li+p+++g+s +++v+h+dl+ PGSC0003DMP400036616 242 GTIELIYLQTYAPTTLAPaRDFWTLRYTTSLEDGSLVICERSLTSNTGGPVgppATSSVRAKMLPSGFLIRPCEGGGSIIHIVDHIDLD 330 ********************************************9999999****************************** PP SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS START 174 grlphwllrslvksglaegaktwvatlqrq 203 + +++++lr+l++s+ + ++k+++a++++ PGSC0003DMP400036616 331 ACSVPEVLRPLYESSKILAQKMTMAAFRYI 360 ***********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.451	1	64	IPR001356	Homeobox domain
SMART	SM00389	1.5E-15	2	68	IPR001356	Homeobox domain
CDD	cd00086	9.10E-16	5	65	No hit	No description
Pfam	PF00046	2.2E-15	5	63	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-17	5	69	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.0E-18	7	63	IPR009057	Homeodomain-like
CDD	cd14686	1.08E-5	57	93	No hit	No description
PROSITE profile	PS50848	25.976	144	372	IPR002913	START domain
CDD	cd08875	7.08E-70	148	364	No hit	No description
Gene3D	G3DSA:3.30.530.20	2.1E-19	152	343	IPR023393	START-like domain
SMART	SM00234	1.4E-50	153	363	IPR002913	START domain
Pfam	PF01852	2.6E-51	154	361	IPR002913	START domain
SuperFamily	SSF55961	7.0E-34	154	365	No hit	No description
Pfam	PF08670	8.0E-46	688	833	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MDSSKYVRYT PEQVEALERV YAECPKPTSL KRHQLIRECS ILSNIDPKQI KVWFQNRRCR 60 EKQRKEASHL QTVNRKLTAM NKLLMEENDR LQKHVSHLVY DNGFMRQQLH TVNSTTTDTC 120 CESVVVSDQQ QQQNPIPQHH PQRDANSPAG LLAIAEETLT EFLGKATGTA VDWVQMIGMK 180 PGPESIGIVA VSRNCNGVAA RACGLVSLEP MKVAEILKDR PSWYRDCRCL DILNVIPTGN 240 GGTIELIYLQ TYAPTTLAPA RDFWTLRYTT SLEDGSLVIC ERSLTSNTGG PVGPPATSSV 300 RAKMLPSGFL IRPCEGGGSI IHIVDHIDLD ACSVPEVLRP LYESSKILAQ KMTMAAFRYI 360 RQIAQETSGE IQYAGGRQPA VLRAFSQRLC RGFNNAVSGF IDDGWTIMGS DGVDDVTIAV 420 NSSPSKFLDA QYNTLSILPT FGGVLCARAS MLLQDVCPAL LVRFLREHRS EWADYGVDAY 480 SSASLKASPY AVPCARPGVF PSSQVILPLA QTVEHEEFLE VVRLEGHAFS PEDIALSRDM 540 YLLQLCSGVE ENATGACAQL VFAHIDESFG DDAPLLPSGF SVIPLEPKSD SPSAARTLDL 600 ASTLEARTGG TRLAGEVEGR SYNHRSVLTI AFQFAFENHY RENVAAMARQ YVRSIVGSVQ 660 RVAMAIAPSR LCSQLTPKSF PGSPEAVTLA RWICRSYKNH TGGELLQVES QAAGDAVLKQ 720 LWHHTDSIMC CSVKMNDSAV FSFSNQAGLD MLETTLIALQ DIMLDKILDE AGRKVLLSEF 780 PKIMQQGFAY LPAGLCVSSM GRPVSYEQAV AWKVLNDDNS SHCLAFMFTN WSFI*

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MDSSKYVRYT PEQVEALERV YAECPKPTSL KRHQLIRECS ILSNIDPKQI KVWFQNRRCR  60
EKQRKEASHL QTVNRKLTAM NKLLMEENDR LQKHVSHLVY DNGFMRQQLH TVNSTTTDTC  120
CESVVVSDQQ QQQNPIPQHH PQRDANSPAG LLAIAEETLT EFLGKATGTA VDWVQMIGMK  180
PGPESIGIVA VSRNCNGVAA RACGLVSLEP MKVAEILKDR PSWYRDCRCL DILNVIPTGN  240
GGTIELIYLQ TYAPTTLAPA RDFWTLRYTT SLEDGSLVIC ERSLTSNTGG PVGPPATSSV  300
RAKMLPSGFL IRPCEGGGSI IHIVDHIDLD ACSVPEVLRP LYESSKILAQ KMTMAAFRYI  360
RQIAQETSGE IQYAGGRQPA VLRAFSQRLC RGFNNAVSGF IDDGWTIMGS DGVDDVTIAV  420
NSSPSKFLDA QYNTLSILPT FGGVLCARAS MLLQDVCPAL LVRFLREHRS EWADYGVDAY  480
SSASLKASPY AVPCARPGVF PSSQVILPLA QTVEHEEFLE VVRLEGHAFS PEDIALSRDM  540
YLLQLCSGVE ENATGACAQL VFAHIDESFG DDAPLLPSGF SVIPLEPKSD SPSAARTLDL  600
ASTLEARTGG TRLAGEVEGR SYNHRSVLTI AFQFAFENHY RENVAAMARQ YVRSIVGSVQ  660
RVAMAIAPSR LCSQLTPKSF PGSPEAVTLA RWICRSYKNH TGGELLQVES QAAGDAVLKQ  720
LWHHTDSIMC CSVKMNDSAV FSFSNQAGLD MLETTLIALQ DIMLDKILDE AGRKVLLSEF  780
PKIMQQGFAY LPAGLCVSSM GRPVSYEQAV AWKVLNDDNS SHCLAFMFTN WSFI*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269\|PubMed:11395776, ECO:0000269\|PubMed:15328016, ECO:0000269\|PubMed:15598805}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400036616

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by miR165 and miR166. {ECO:0000269\|PubMed:14999284, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006353020.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-14 isoform X2
Swissprot	O04291	0.0	ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBL	M1BWB2	0.0	M1BWB2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400054421	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34710.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400036616
Entrez Gene	102601513

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Jia X, et al. Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Sci., 2015. 233: p. 11-21 [PMID:25711809] Müller CJ, et al. PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis. Plant Physiol., 2016. 170(2): p. 956-70 [PMID:26637548] Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Kim ES, et al. HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots. Physiol Plant, 2016. 157(2): p. 221-33 [PMID:26968317] Husbands AY,Aggarwal V,Ha T,Timmermans MC In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes. Plant Cell, 2016. 28(8): p. 1783-94 [PMID:27385814] Di Ruocco G, et al. Differential spatial distribution of miR165/6 determines variability in plant root anatomy. Development, 2018. [PMID:29158439] Wójcik AM,Nodine MD,Gaj MD miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. Front Plant Sci, 2017. 8: p. 2024 [PMID:29321785] Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana. Plant Cell Physiol., 2018. 59(5): p. 1017-1026 [PMID:29462472]