PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400036873

Common Name

LOC107063159

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 213aa MW: 24576.8 Da PI: 8.4628

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400036873	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.7	4e-18	21	74	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++t+eq+++Le+ F ++++ +++ +LAk+lg++ rq+ +W+qNrRa++k+ PGSC0003DMP400036873 21 KKRLTQEQVKRLEASFDLTKKLELDQKLQLAKELGVPSRQIAIWYQNRRARWKN 74 5679************************************************95 PP
2	HD-ZIP_I/II	97.7	1.2e-31	20	111	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +k+rl++eqvk LE sF+ ++kLe ++K +la+eLg+ rq+a+W+qnrRAR+k++ lE dy++L+ ++d+ +e++++eke+e+L+ e PGSC0003DMP400036873 20 NKKRLTQEQVKRLEASFDLTKKLELDQKLQLAKELGVPSRQIAIWYQNRRARWKNQSLELDYTTLQLKLDTTLAEKKQIEKENERLKIE 108 79*************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 lk+ PGSC0003DMP400036873 109 LKK 111 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.305	15	75	IPR001356	Homeobox domain
SMART	SM00389	2.5E-13	18	79	IPR001356	Homeobox domain
CDD	cd00086	7.94E-13	21	76	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-18	21	81	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.75E-16	21	82	IPR009057	Homeodomain-like
Pfam	PF00046	1.6E-15	21	74	IPR001356	Homeobox domain
PRINTS	PR00031	4.2E-5	46	55	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	50	73	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.2E-5	55	71	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MNNFLNSQYL HKHQSILNHN KKRLTQEQVK RLEASFDLTK KLELDQKLQL AKELGVPSRQ 60 IAIWYQNRRA RWKNQSLELD YTTLQLKLDT TLAEKKQIEK ENERLKIELK KVNEMLIAIK 120 QAKVQEELAQ GIIPCSISSG NCEEGGSSSF QEDVSCSWVN NNKINNNNNN NNNNCESNLS 180 LDELYSCLMG GEEGSKYSLS WQNGKDIWVW KK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400036873

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	1e-167	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015170122.1	1e-152	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBL	M1BWX4	1e-150	M1BWX4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400054818	1e-151	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	5e-28	homeobox protein 52

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400036873
Entrez Gene	107063159

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]