PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400036956

Common Name

LOC102606309

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TALE

Protein Properties

Length: 705aa MW: 77438.4 Da PI: 7.1908

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400036956	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.9	1.9e-09	395	432	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + PGSC0003DMP400036956 395 FEHflHPYPKDSDKMMLAKQTGLTRSQVSNWFINARVR 432 554459******************************88 PP
2	BELL	110.2	1.2e-35	259	330	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY++y++q+q vi e++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi PGSC0003DMP400036956 259 ERQEIQMKKAKLVNMLDEVEQRYRHYHHQMQSVIHWLEQAAGIGSARTYTALALQTISKQFRCLKDAIIGQI 330 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.7E-54	185	328	IPR006563	POX domain
Pfam	PF07526	6.0E-46	192	326	IPR006563	POX domain
PROSITE profile	PS50071	12.147	373	436	IPR001356	Homeobox domain
SMART	SM00389	9.7E-10	376	440	IPR001356	Homeobox domain
CDD	cd00086	7.95E-13	376	437	No hit	No description
SuperFamily	SSF46689	5.99E-17	377	442	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-28	379	442	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-18	393	432	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009610	Biological Process	response to symbiotic fungus
GO:0009737	Biological Process	response to abscisic acid
GO:0010197	Biological Process	polar nucleus fusion
GO:0010201	Biological Process	response to continuous far red light stimulus by the high-irradiance response system
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence Send to blast
MASYFHGNSE IQEGNDGLQT LILMNPGYVG FSETQHHHAP PPPGGSSNNI VFFNSNPLGN 60 SINLSHAPPP PPPPQQHFVG IPLATAAFTA PSQDSGNNNN NESISALHGF LARSSQYGFY 120 NPANDITAAR EVTRAHHQQQ QGLSLSLSSS QQPGFGNFTA AREIVSSPTR SASASGIQQQ 180 QQQQQSISSV PLSSKYMKAA QELLDEVVNV GKSMRSTNST EVVVNNDVKK SKIMTDMDGQ 240 IDGGADKDGT PTTELSTAER QEIQMKKAKL VNMLDEVEQR YRHYHHQMQS VIHWLEQAAG 300 IGSARTYTAL ALQTISKQFR CLKDAIIGQI RSAGKTLGEE DSLGGKIEGS RLKFVDNQLR 360 QQRALQQLGM IQHNAWRPQR GLPERAVSVL RAWLFEHFLH PYPKDSDKMM LAKQTGLTRS 420 QVSNWFINAR VRLWKPMVEE MYLEEIKEQN GLGQEKTSKL GEQNEDSTTS RSIATQDKSP 480 GSDSQNKSFV SKQDNHLPQH NPASPMPMSN TTSIPPIGMN IRNQSAGFNL IGSPEIESIN 540 ITQGSPKKPR NNEMLHSPNS IPSINIDVKP NEQQMSMKFG DDRQDRDGFS LMGGPMNFMG 600 GFGAYPIGEI ARFSTEQFSA PYSTSGTVSL TLGLPHNENL SMSATHHSFL PIPTQNIQIG 660 SEPNHEFGSL NTPTSAHSTS SVYENFNIQN RKRFAAPLLP DFVA*

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence Send to blast

MASYFHGNSE IQEGNDGLQT LILMNPGYVG FSETQHHHAP PPPGGSSNNI VFFNSNPLGN  60
SINLSHAPPP PPPPQQHFVG IPLATAAFTA PSQDSGNNNN NESISALHGF LARSSQYGFY  120
NPANDITAAR EVTRAHHQQQ QGLSLSLSSS QQPGFGNFTA AREIVSSPTR SASASGIQQQ  180
QQQQQSISSV PLSSKYMKAA QELLDEVVNV GKSMRSTNST EVVVNNDVKK SKIMTDMDGQ  240
IDGGADKDGT PTTELSTAER QEIQMKKAKL VNMLDEVEQR YRHYHHQMQS VIHWLEQAAG  300
IGSARTYTAL ALQTISKQFR CLKDAIIGQI RSAGKTLGEE DSLGGKIEGS RLKFVDNQLR  360
QQRALQQLGM IQHNAWRPQR GLPERAVSVL RAWLFEHFLH PYPKDSDKMM LAKQTGLTRS  420
QVSNWFINAR VRLWKPMVEE MYLEEIKEQN GLGQEKTSKL GEQNEDSTTS RSIATQDKSP  480
GSDSQNKSFV SKQDNHLPQH NPASPMPMSN TTSIPPIGMN IRNQSAGFNL IGSPEIESIN  540
ITQGSPKKPR NNEMLHSPNS IPSINIDVKP NEQQMSMKFG DDRQDRDGFS LMGGPMNFMG  600
GFGAYPIGEI ARFSTEQFSA PYSTSGTVSL TLGLPHNENL SMSATHHSFL PIPTQNIQIG  660
SEPNHEFGSL NTPTSAHSTS SVYENFNIQN RKRFAAPLLP DFVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	382	440	5	63	Homeobox protein Meis2
3k2a_B	4e-16	382	440	5	63	Homeobox protein Meis2
Search in ModeBase

Function -- GeneRIF ? help Back to Top
BEL29 RNA suppresses growth of tubers in potato. [PMID: 28084609]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400036956

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF406702	0.0	AF406702.1 Solanum tuberosum BEL1-related homeotic protein 29 (Bel29) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006348466.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_006348467.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_015164720.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-148	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	M1BX38	0.0	M1BX38_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400054945	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-126	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400036956
Entrez Gene	102606309

Publications ? help Back to Top
Chen H,Rosin FM,Prat S,Hannapel DJ Interacting transcription factors from the three-amino acid loop extension superclass regulate tuber formation. Plant Physiol., 2003. 132(3): p. 1391-404 [PMID:12857821] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ghate TH,Sharma P,Kondhare KR,Hannapel DJ,Banerjee AK The mobile RNAs, StBEL11 and StBEL29, suppress growth of tubers in potato. Plant Mol. Biol., 2017. 93(6): p. 563-578 [PMID:28084609]