PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037034
Common NameLOC102599915
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 312aa    MW: 33970.5 Da    PI: 10.096
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037034genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA87.91.4e-27143197258
             CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            p++VNaKQy++Il+RR++Rak  e kk   k rkpylh SRh hAlrRpRg+gGrF
  PGSC0003DMP400037034 143 GPIFVNAKQYHGILRRRKTRAKEME-KKA-LKPRKPYLHLSRHLHALRRPRGCGGRF 197
                           69*******************9666.555.6*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.5E-30140200IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.034141200IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-20144166IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.8E-23144197IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-20174197IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MHTTVFSKGN EGVVQNQSVA TLCTAPWWSS GFMSQSVAFA EPFGQLKSAS VEQQPKGNAT  60
EFTISSGDCK SSANGQKLSN VQAATSVRAA NMDYRGHFDL GFGQSLISAK YPYGEQCIGL  120
FSAYAPQLSG RIMLPLNLAS DEGPIFVNAK QYHGILRRRK TRAKEMEKKA LKPRKPYLHL  180
SRHLHALRRP RGCGGRFLNT RNMNGTMKGG KNPDMFKTGD VQNFYPTGSQ NSEVLQSDSS  240
NLSSPKETSG SRFFDSSGVT NMYSSGNLDP LLFQNLRPPV QAIPDMMNTG HGIFMSGKWV  300
GTADSCCNLK V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-16142198260HAPB protein
4g92_A1e-16142198260HAPB protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037034
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348448.10.0PREDICTED: nuclear transcription factor Y subunit A-10 isoform X2
TrEMBLM1BXA50.0M1BXA5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000550610.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-30nuclear factor Y, subunit A10
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]