PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037092
Common NameLOC102595967
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRF
Protein Properties Length: 600aa    MW: 64522.5 Da    PI: 7.6159
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037092genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.71.1e-24209252144
                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                           d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e
  PGSC0003DMP400037092 209 DPEPGRCRRTDGKKWRCSREAVPDQKYCERHINRGRHRSRKHVE 252
                           79****************************************98 PP
2QLQ613.3e-21140176137
                   QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                           ++FT++Q+++L++Q+l+yK+++an PvP++Ll +i+k
  PGSC0003DMP400037092 140 GPFTPSQWMELEHQALIYKHFVANIPVPHQLLTPIKK 176
                           59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.9E-13140176IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.4E-14141174IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.061141176IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.563209253IPR014977WRC domain
PfamPF088799.3E-21210252IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MDFGGLMTME AITSTAQQSE TSNGSGQLKQ QRSGACDDNI WRPSKVPKPA DDLSAFCKQQ  60
GPTLFMRSDS PNDGRGHSTM LSFSSNKSEE IPFLCTNNVS ARNLPFPLFD SGSYNTRAAS  120
AYASGGSNES TPGSFSRFRG PFTPSQWMEL EHQALIYKHF VANIPVPHQL LTPIKKSLNP  180
YAFSGLSADP YASNWGWGTF HLGFAGNTDP EPGRCRRTDG KKWRCSREAV PDQKYCERHI  240
NRGRHRSRKH VEVQNNHAVS GSTTSKVASV APSSSATVIS SSGTLLISDG ASNSLGTVQH  300
QSNSLQPSAA NPSTEQLVNR MLGHRGASVI SPTICVKPKD SAIAVQKQHN GVELSSQTDF  360
GLVSSDSLLN PSQRNSFANP KNPIAFLDFN DHEQSEQHPV HHFIDGWAKE QSSRTSTSWP  420
GQLKDWTQLS MSIPMTASDF SSSSSSPRQE KLTLSPLRVS RDVDPIQMGL GMTSSYGEPM  480
QKTANWVPVS WENSLGGPLG EVLNSTAGYS GDGKSVSALN LGTEVWDNSP SFGSSPTGVL  540
QKTTFVSLSN SSSGSSPRGD SKKVHEGIAM CDDVIGSTVA NSLCIPSVEV SCLIENKLH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037092
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363835.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLM1BXF00.0M1BXF0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000551510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-106growth-regulating factor 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]