PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037130
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HB-other
Protein Properties Length: 201aa    MW: 22585.5 Da    PI: 9.0442
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037130genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.91.3e-111732002754
                           HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  27 aeereeLAkklgLterqVkvWFqNrRak 54 
                           ++++++LA++l+L  rqV vWFqNrRa+
  PGSC0003DMP400037130 173 QKQKQDLARELNLRPRQVEVWFQNRRAR 200
                           5899**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-8117200IPR009057Homeodomain-like
PROSITE profilePS5007113.102117200IPR001356Homeobox domain
SMARTSM003890.0064119200IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-13120200IPR009057Homeodomain-like
CDDcd000862.18E-10121200No hitNo description
PfamPF000464.2E-9173200IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGFDDICNTG LVLGLGFSST ADYKSKKITT PLVGKGPSLG LEPSLTLSLI SGDRTYEQQP  60
IKISKDHQSA DLYRQDSAAS SYSNASVKRE RDVGSEETTT EVERVSSRVI SDEDDDGSNA  120
RKKLRLTKAQ SALLEESFKI HSTLNPVSSY FLIDRYSRIC NMFLLVINFL IMQKQKQDLA  180
RELNLRPRQV EVWFQNRRAR *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363789.11e-109PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466036e-39HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLM1BXI81e-145M1BXI8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000551991e-108(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.12e-39HD-ZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]