PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037144
Common NameLOC102585909
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 222aa    MW: 25774.7 Da    PI: 9.0475
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037144genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.34.5e-10117170558
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                           ++ rr+ +NRe+ArrsR RK++ +e+L++ +  L+  N++  ++l  ++  ++ 
  PGSC0003DMP400037144 117 RKRRRMVSNRESARRSRMRKQKHLENLRNQANRLKVGNREIMNRLRLITYRCQV 170
                           5779999*******************************9999888888877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-9113177IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.783115165IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-9117165No hitNo description
Gene3DG3DSA:1.20.5.1701.9E-6117165No hitNo description
PfamPF001704.5E-7117169IPR004827Basic-leucine zipper domain
CDDcd147023.12E-15118169No hitNo description
PROSITE patternPS000360120135IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MLSTFPATTL STDGLFPYLF PAFDGGFTPW ECIEPAFLFP QEVEEEEPVV SPKESPPPEP  60
VILNSDSGSD DSKPNSVHSS SGSDDPNRNN NNNNNTNRCP DERKRQRTTS NRDIDERKRR  120
RMVSNRESAR RSRMRKQKHL ENLRNQANRL KVGNREIMNR LRLITYRCQV VQCENERVRT  180
ESAILRQRLE GIRQILITRQ LEQQFNSYSA WACNNMEQRP H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102120RKRQRTTSNRDIDERKRRR
2116120RKRRR
3116137RKRRRMVSNRESARRSRMRKQK
4129136RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037144
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363804.11e-162PREDICTED: basic leucine zipper 63
TrEMBLM1BXK21e-161M1BXK2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000552141e-162(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28202251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22850.24e-35basic leucine-zipper 6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]