PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037187
Common NameLOC102602066
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 477aa    MW: 52574.5 Da    PI: 6.4276
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037187genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-1657101147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r rW++eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
  PGSC0003DMP400037187  57 RERWSEEEHKKFLEALKLHGRA-WRRIEEHVG-TKTAVQIRSHAQKF 101
                           78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.08E-1651105IPR009057Homeodomain-like
PROSITE profilePS5129421.20452106IPR017930Myb domain
TIGRFAMsTIGR015572.9E-1555104IPR006447Myb domain, plants
SMARTSM007175.5E-1356104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-95797IPR009057Homeodomain-like
PfamPF002496.8E-1457100IPR001005SANT/Myb domain
CDDcd001673.15E-1059102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MTIGDQSESD TILPSRNRMS VDVGAPSPRS IQMEEQVIPG EEYAPKIRKP YTISKQRERW  60
SEEEHKKFLE ALKLHGRAWR RIEEHVGTKT AVQIRSHAQK FFSKVVRESS NGDASSVKSI  120
EIPPPRPKRK PMHPYPRKMV TPLKSGTLAS EKLNRSGSPD LYLSEPENQS PTSVLSAFGS  180
DAFGTVDSTK PSEQSSPVSS AVAENSGDLV LSEPSDFIVE ESRSSPARAY TSSNPANQTC  240
VKLELFPEDN DFVKEGSDEA SSTQCLKLFG KTVLVTDTYM PSSTSGQISL TDENDEPASR  300
TLPRSTFPAK YLHWDSECPR STFSIVPPTP SYYFPTPNVS PGTNQSDSTP LLPWGSSAAV  360
RCTQVHNPIP MKGRPLFNDR DLEGKETQKE GSSTGSNTES VDAELSGDKN LEIEAQSSRN  420
LVEESVRGGS LFERRANSTK RVKGFVPYKR CLAERGMSSS TLTGEEREEQ RTRLCL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037187
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1034980.0DQ103498.1 Solanum ochranthum putative At5g37260 (CT251) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350462.10.0PREDICTED: protein REVEILLE 1
TrEMBLM1BXP30.0M1BXP3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000552630.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31852447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.18e-68MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]