PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037283
Common NameLOC102601447
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 205aa    MW: 22343.2 Da    PI: 4.825
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037283genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.84.7e-302104198
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C+vlr++C+++C+l+ ++     p++q +++ +v k+FG+s +++l++a+p+++r+d+++sl++eA+ r+ +Pv Gavg++++++
  PGSC0003DMP400037283   2 SCNGCRVLRKRCSDNCTLRSCLdgiddPQAQGNATLFVSKFFGRSDLMSLIAAVPQNRRPDLFKSLLFEACGRTMNPVTGAVGLLSTGN 90 
                           6**************************************************************************************** PP

                DUF260  85 qqleqlkaelallk 98 
                           ++++q++++++l++
  PGSC0003DMP400037283  91 WHVCQKAVQTVLAG 104
                           *******9998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.8331107IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSCNGCRVLR KRCSDNCTLR SCLDGIDDPQ AQGNATLFVS KFFGRSDLMS LIAAVPQNRR  60
PDLFKSLLFE ACGRTMNPVT GAVGLLSTGN WHVCQKAVQT VLAGGNLRPV FAGILTPPWF  120
DDSFRFGGAW DMPNQFSNKS ESMFIDGSDQ IEGMEWISSE KRWNTSSSFG SETELSDISL  180
GLDSGYGYAE GVKGEEPKLL NLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037283
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362058.11e-150PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN233e-51LBD38_ARATH; LOB domain-containing protein 38
TrEMBLM1BXU31e-149M1BXU3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000553931e-149(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-53LOB domain-containing protein 38
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]