PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037446
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 317aa    MW: 35025.9 Da    PI: 10.776
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037446genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.74.7e-12106150347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+  ++ + ++lG+g+W+ I+++    Rt+ q+ s+ qky
  PGSC0003DMP400037446 106 SWTEEEHRYFLIGLEKLGKGDWRGISKHYVPSRTPTQVASHAQKY 150
                           7***************************999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.102.3E-4627IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.565924IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.38699155IPR017930Myb domain
SuperFamilySSF466896.88E-18100155IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-16102153IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.1E-11103149IPR009057Homeodomain-like
SMARTSM007177.6E-10103153IPR001005SANT/Myb domain
CDDcd001671.43E-9106151No hitNo description
PfamPF002494.8E-10106150IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVSMAKDARK CSHCGHNGHN SRTCNSKGIK LFGVRIDDNI TSNNKNRHSF VDTKMKMGDY  60
ESIRRSKSLG NLEHAAANYD HNGGVESGYL SDGPILSIRH RKKGTSWTEE EHRYFLIGLE  120
KLGKGDWRGI SKHYVPSRTP TQVASHAQKY FIRMASIEKK KRRPSVFDVH LKEPNSQIPS  180
KSSSYIPEIF KEASKGIPSA TRERPPLSPS PISRPFGVPN LPHMPYVVGV PRNIQGVTSS  240
KVGPTISWIP IVNFQNQSRI HLRNYSQGPP PFAPFVARPP IGVLPSRPPP QVQSQAGHST  300
PMTTNKDGVN ISIGAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158162KKKRR
2158163KKKRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037446
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-100HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169157.10.0PREDICTED: transcription factor MYB1R1-like
TrEMBLM1BY820.0M1BY82_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000556160.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117831823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.13e-51MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]