PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037448
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 280aa    MW: 30889.2 Da    PI: 10.5995
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037448genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.9e-125296347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +WT+eE+  ++ + ++lG+g+W+ I+++    Rt+ q+ s+ qky
  PGSC0003DMP400037448 52 SWTEEEHRYFLIGLEKLGKGDWRGISKHYVPSRTPTQVASHAQKY 96
                          7***************************999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.38645101IPR017930Myb domain
SuperFamilySSF466895.38E-1846101IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-164899IPR006447Myb domain, plants
SMARTSM007177.6E-104999IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-114995IPR009057Homeodomain-like
CDDcd001671.01E-95297No hitNo description
PfamPF002493.9E-105296IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MKMGDYESIR RSKSLGNLEH AAANYDHNGG VESGYLSDGP ILSIRHRKKG TSWTEEEHRY  60
FLIGLEKLGK GDWRGISKHY VPSRTPTQVA SHAQKYFIRM ASIEKKKRRP SVFDVHLKEP  120
NSQIPSKSSS YIPEIFKETS SPLEQLFDTC QIKGQASKGI PSATRERPPL SPSPISRPFG  180
VPNLPHMPYV VGVPRNIQGV TSSKVGPTIS WIPIVNFQNQ SRIHLRNYSQ GPPPFAPFVA  240
RPPIGVLPSR PPPQVQSQAG HSTPMTTNKD GVNISIGAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104108KKKRR
2104109KKKRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037448
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-100HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169157.10.0PREDICTED: transcription factor MYB1R1-like
TrEMBLM1BY840.0M1BY84_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000556160.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-38MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]