PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037657
Common NameLOC102601024
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 418aa    MW: 45347.1 Da    PI: 9.9256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037657genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022186208223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +C++Cg+ F  ++  + H  + H
  PGSC0003DMP400037657 186 TCHKCGEQFVKWEAVEAHHLSkH 208
                           8*****************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280187208IPR007087Zinc finger, C2H2
SuperFamilySSF563992.78E-22210416No hitNo description
Gene3DG3DSA:3.90.228.106.8E-8211390IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MPAVWFALKK SLQCRSEIKD VYDPRSDGRN LSKISTKKAT TGRSGCSRSI ANLKDVIHGS  60
KRHMEKPPLQ SPRSIGSSEL LNPITHEVVL SNSTCELKIT SCNFQDGNGS STGNNVESIS  120
AFMGTLKPGT PGPGGHHIGS SRKYRGFGSP IRKGSPGNLS RKTGPGFGGV VSRPKASYGA  180
DSHGLTCHKC GEQFVKWEAV EAHHLSKHAV TELVEGDSSR KIVEIICRTS WSKPENSSNG  240
IERILKVHNM QKVLAQFEEY RELVKIKASK LAKKHPRCLA DGNELLRFFG TTVECSLGIN  300
SSSSLCTSEK CKVCRILQHG FSIKKEINGG VGVFTASTSG RALEAIEENM LSWRKALIVC  360
RVIAGRVHRP LENVQELIGQ SGFDSLAGKV GLYSNIEELY LLSPKALLPC FVVICKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037657
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365876.10.0PREDICTED: uncharacterized protein LOC102601024
TrEMBLM1BYS00.0M1BYS0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000559290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22442235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-164C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]