PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037694
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 217aa    MW: 24319.8 Da    PI: 9.798
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037694genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.12.5e-3275129358
             CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           p+YVNaKQy++IlkRRq Rakle+++kl  k rkpylheSRh+hA++R RgsgGrF
  PGSC0003DMP400037694  75 PIYVNAKQYSAILKRRQVRAKLEAQNKL-VKDRKPYLHESRHRHAMKRVRGSGGRF 129
                           9***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-3671132IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.95972132IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.2E-247597IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.1E-2875129IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607797IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.2E-24106129IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MMFLMDEPLI TKMFDLYEIV VAVNPRSYSA ILDGVVELSA ILDGVVDSTQ MIYPQMVGVT  60
STRVALPLEC TESLPIYVNA KQYSAILKRR QVRAKLEAQN KLVKDRKPYL HESRHRHAMK  120
RVRGSGGRFL NTKNMQQSKP SSPKHDRNIF KRQAGGNLSS SMVQHSESGS WGTSTQSGSD  180
VTSIFSGDNM FQQPEFRVSG FPFHMQEAED FMHVGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-2375134463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113122RHRHAMKRVR
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037694
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8654090.0KJ865409.1 Capsicum annuum cultivar CMS line FS4401 mitochondrion, complete genome.
GenBankKJ8654100.0KJ865410.1 Capsicum annuum cultivar Jeju mitochondrion, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351613.11e-120PREDICTED: nuclear transcription factor Y subunit A-8-like
SwissprotQ93ZH21e-42NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLM1BYT61e-161M1BYT6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000559821e-162(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48002027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.48e-41nuclear factor Y, subunit A8
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]