PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037848
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 415aa    MW: 46814.1 Da    PI: 6.3772
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037848genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS278.71.7e-85434122374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalkl....f 84 
                           v lLl  Ae++++++l +a++lL+   + + ++g+p+qR++ yf+e L++r+ +    +++++ + + + +   ++e+l+  ++     
  PGSC0003DMP400037848  43 VLLLLVSAEMLANRQLDCARKLLNLCINFSLSAGNPVQRAVYYFAESLRKRIDKgiGIPTIASNIDTVNPN--IMEEVLMDPRTdvieT 129
                           5689999**********************************************954456666666555555..4555555555555678 PP

                  GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeel 172
                            ++ P+ k++++t  qaIl++v++ +r+H iD++i+ G QW  L+qaL    e pp +l+iT+vg     s ++++e+g+rL++fA++l
  PGSC0003DMP400037848 130 EQMLPFRKVTQFTGIQAILDSVKSFKRIHLIDLGIKTGSQWTILMQALVGNGECPPeHLKITAVGT----SLTRMQEVGNRLTSFADTL 214
                           9************************************************87765555*********....9****************** PP

                  GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                           ++pf+f++ v+++l  ++ + ++ k gE++a+ +  +l +ll+ + +les    ++++ ksl P v+vv+e ea++n++ F +rf eal
  PGSC0003DMP400037848 215 HIPFSFKT-VVSDLRHIRKDLFESKAGEVVAIYSDSRLWTLLAWPNHLES----LIQVCKSLDPCVMVVTEIEANTNTPIFIDRFNEAL 298
                           ********.7999*****************************77777777....*********************************** PP

                  GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy. 349
                            yysa+fdsle+ ++ +++ r++   +++gr i+nv++ eg+e  +rhe+l++Wr+ +e++G ++ +ls++   qakll +k   +g+ 
  PGSC0003DMP400037848 299 FYYSAIFDSLETCIGWNHQYRAVAQGVYIGRIIENVITSEGEEMAHRHEKLGSWRALFERFGIEETELSHSSLYQAKLLAEKSTCHGFc 387
                           ************************************************************************************99963 PP

                  GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                           ++e + +sl++ Wk+ p+ s+SaW+
  PGSC0003DMP400037848 388 SLEMDGKSLIIKWKGTPIKSLSAWK 412
                           7889999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.48916391IPR005202Transcription factor GRAS
PfamPF035146.0E-8343412IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MKIAKEQLKL YTSQNHDAYS IIFSPLIEDL GLSPQVTEEV ELVLLLLVSA EMLANRQLDC  60
ARKLLNLCIN FSLSAGNPVQ RAVYYFAESL RKRIDKGIGI PTIASNIDTV NPNIMEEVLM  120
DPRTDVIETE QMLPFRKVTQ FTGIQAILDS VKSFKRIHLI DLGIKTGSQW TILMQALVGN  180
GECPPEHLKI TAVGTSLTRM QEVGNRLTSF ADTLHIPFSF KTVVSDLRHI RKDLFESKAG  240
EVVAIYSDSR LWTLLAWPNH LESLIQVCKS LDPCVMVVTE IEANTNTPIF IDRFNEALFY  300
YSAIFDSLET CIGWNHQYRA VAQGVYIGRI IENVITSEGE EMAHRHEKLG SWRALFERFG  360
IEETELSHSS LYQAKLLAEK STCHGFCSLE MDGKSLIIKW KGTPIKSLSA WKFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-407541236375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037848
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389080.0AC238908.8 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-126f9 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358212.10.0PREDICTED: DELLA protein RGL2-like
TrEMBLM1BZ600.0M1BZ60_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000562320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85001728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-58RGA-like 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]