PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400038077
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 296aa    MW: 32960.9 Da    PI: 6.7257
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400038077genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.2e-101011381954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yps +++  LA+++gL+ +qV +WF N R +
  PGSC0003DMP400038077 101 FEHflHPYPSDADKHLLARQTGLSRNQVANWFINARVR 138
                           665559******************************88 PP
2BELL41.53.3e-141324172
                  BELL 41 aglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                          +g g+a pYt+lA+ka+SrhF+cLkd +a q+
  PGSC0003DMP400038077  1 MGFGAAVPYTALAQKAMSRHFKCLKDGVAAQL 32
                          699**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075262.2E-9128IPR006563POX domain
PROSITE profilePS5007112.48779142IPR001356Homeobox domain
SMARTSM003892.1E-982146IPR001356Homeobox domain
CDDcd000861.23E-1282143No hitNo description
SuperFamilySSF466891.37E-1783149IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-2985148IPR009057Homeodomain-like
PfamPF059203.3E-1899138IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGFGAAVPYT ALAQKAMSRH FKCLKDGVAA QLKKTCEALG EKDASSSSGL TKGETPRLKV  60
LEQSLRQQRA FQQMGMMEQE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS DADKHLLARQ  120
TGLSRNQVAN WFINARVRLW KPMVEEMYQR EVNEDDDDDM LENQNRTNTQ TPTPNIIITT  180
NSNITETKSA ATATIASDKK PQINVSENDP SIVAMNTHYS SSMPTQLTNF STIQDESDHI  240
LYRRSGAEYG TTNMASNSEI GSNMITFGTT TASDVSLTLG LRHAGNLPEN THFFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-1788146563Homeobox protein Meis2
3k2a_B7e-1788146563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400038077
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4067010.0AF406701.1 Solanum tuberosum BEL1-related homeotic protein 22 (Bel22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344823.20.0PREDICTED: BEL1-like homeodomain protein 2
SwissprotQ9SW801e-104BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLM1BZP00.0M1BZP0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000566120.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33412139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.36e-99BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]