PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400038096
Common NameLOC107059199
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 307aa    MW: 34167.7 Da    PI: 5.0952
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400038096genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK31.14.7e-10273306437
                RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCR 37 
                            i+ ++l+++  ++++dAAk+Lgv++++LKriCR
  PGSC0003DMP400038096 273 GITRKMLEQHDGMTLEDAAKDLGVSASTLKRICR 306
                           6999*****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020423.4E-9274306IPR003035RWP-RK domain
CDDcd000930.00477276306No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MYYEFEYSSE VCFIESGKAL VGRAFASQGS CFCKDVTILS IKEYPLVPSA RKARFTQSFA  60
ICLQSKCANN IICVIEYFLP PNEMVVRDTK TFLNMLLSTM KEQLPGFVVA PGNELGQRML  120
VEVIKVSPSD EFDSFEIGQP LLSVQSLQNG GEATDIDSFC QQSNLQKENN VAAALLVPSC  180
SSHKRDSLNC ERTVEGDPLL PHPIGEAMTN RGKVNLDVAH DDHIEDTTEI MQPDSHFEQP  240
NFETNSTRNA TTNNEMIHSH KKNVIQRIEK DHGITRKMLE QHDGMTLEDA AKDLGVSAST  300
LKRICR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400038096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161164.10.0PREDICTED: protein NLP1-like
TrEMBLM1BZQ60.0M1BZQ6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000566520.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.15e-17Nin-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]