PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400038098
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 726aa    MW: 82095.3 Da    PI: 5.554
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400038098genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK32.41.8e-105635912452
                RWP-RK  24 eLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                           +L+v+  +LKriCR++ I+RWPh k +++
  PGSC0003DMP400038098 563 TLEVSRATLKRICRENEIARWPHHKTRKV 591
                           689**********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020428.5E-10563591IPR003035RWP-RK domain
SuperFamilySSF542778.83E-17634720No hitNo description
SMARTSM006664.7E-15640722IPR000270PB1 domain
PROSITE profilePS5174520.462640722IPR000270PB1 domain
PfamPF005643.0E-16641720IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.4E-15641720No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MDHEQPSDVC DLMPCKLKWS QLTSIDDSWV FWSTKQNDEL DYQQSIIKSI NSYSVVSICP  60
TEKSRIQSVM EKMSTSNISL FQFWAPIKVN GSTFLSTADQ PFVFYKKLDK RLSSYRKLCL  120
DTLIPIDNEI PFGPPARVFS KLLPEYNPDV SSYSPAEFPL PQTAIPLDSY CAFPVFNIHD  180
QQCLGVFEIV STLPDFRRLN IIKGLNFEPV GFYIPYSINK LFEPPEPLFC DIKDGISRIR  240
KDRRIPFAQI WIPFSQSASS KVLYRAAAST YEYFSLMYHE FEYASKVYFI KSGEALVGRA  300
FASQGSCFCK DVTLLSIEEY PLVPGARKAR FTQSFAICLQ SRCSPNIVCV VEYFLPRRKM  360
AVRDTKTFLN MLLTTMKEQL PGFTVASGNE LGQRMLVEVV KVSPSDELDS FEIGQTLPSV  420
QALQDGGETT EIDSFCQQSN LQNRENNVAA ALLVPSCSSD KRDSLNCEGT VEVDPSLPHP  480
IEEAVTNRGT VNMDVAHDDH IEDTTEIMQL DSHFEQPNLE TNSSGNATTN NEIIHSHKKN  540
AIQRIEKDHG ITCKILEQHY GMTLEVSRAT LKRICRENEI ARWPHHKTRK VNVHVSQGAS  600
FQGAEPYVVD QQCPALSQEK GTDYLGHKIS PASGKPCDSV MTLKVTYRGD IIKFQLPFSS  660
TRVELEGEVE KRLKISLERF SIKYQDEDDD WILITTDSDL RDGMHSLRLL GRTTMRLLVT  720
SEADS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400038098
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161163.10.0PREDICTED: protein NLP7-like
TrEMBLM1BZQ80.0M1BZQ8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000566530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10406515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.14e-42NIN like protein 7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]