PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400038878
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 493aa    MW: 55683.1 Da    PI: 10.6461
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400038878genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-09339138
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                          +++W t+E+++l  av+++G+++W+ +a+++   Rtl+
  PGSC0003DMP400038878  3 KMNWGTWEELILGSAVRRHGTRDWNVVASELR-ARTLY 39
                          689*****************************.99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.562156IPR017877Myb-like domain
SMARTSM007173.9E-4258IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-5355IPR009057Homeodomain-like
PfamPF002492.6E-7337IPR001005SANT/Myb domain
CDDcd001671.58E-5555No hitNo description
SMARTSM002974.7E-17261365IPR001487Bromodomain
CDDcd043691.71E-14264360No hitNo description
Gene3DG3DSA:1.20.920.101.7E-16264385IPR001487Bromodomain
SuperFamilySSF473702.88E-18265365IPR001487Bromodomain
PfamPF004397.1E-11269349IPR001487Bromodomain
PROSITE profilePS5001410.374276346IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MGKMNWGTWE ELILGSAVRR HGTRDWNVVA SELRARTLYP HCFTPEACKA RYEELRKRYS  60
GCTALFEELR KRRVEELKRE LVRSESSIGS LESKIERLQA ERERSDQIDH GLSHAESPAP  120
LTKSEDIESS VKEEAKDGLS AGSFTLDIRT DGTPESQVPT IPSATETVVK LELSESWGRD  180
KAPSTSKVPE SANGNGGAVR KRRGKRRRKD TVWDAKEGSI EDSDNVCSTS LASTSHCKEV  240
LTSCDQSIRR SAASDHIVGI SRFRNDDLMK IFNSITQHEA AMVFRHRLDS QKRARYKKMI  300
RRHMDIETAR SRLANWSIKT PGELFRDFLL LANNAMVFYS KRTREYKAAM ALRDIVTRAY  360
REHYKGSYHK ATSSHLPLPI IGNPPGKPRS VRPRPSKDKL QAKYGNNITA GTLGRQNHRP  420
GDAADSKVPL QTPLSAKKGF KRPEKIKCGS TTETVNPQTK VQAKESSQHN IKVKKEHRVK  480
AVTKERKRAR QK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15572RKRYSGCTALFEELRKRR
2201209RRGKRRRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400038878
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347091.10.0PREDICTED: uncharacterized protein LOC102580063
TrEMBLM1C1L50.0M1C1L5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000577580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55341924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.12e-13DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]