PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400038936
Common NameLOC102584070
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 242aa    MW: 26382.3 Da    PI: 6.6187
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400038936genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.13.9e-40361371101
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC ++Cv+apyf ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v++il+lqqq++
  PGSC0003DMP400038936  36 PCGACKFLRRKCINGCVFAPYFGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRQDAVVTITYEAQARLSDPVYGCVSTILALQQQVA 124
                           7***********************9989************************************************************* PP

                DUF260  89 qlkaelallkeel 101
                           +l++ela +++++
  PGSC0003DMP400038936 125 SLQSELAIVQTQI 137
                           ********99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.3135137IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-3936134IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDEPSSDGDR HKGPGKRVSG AVEQQASGVL LASTAPCGAC KFLRRKCING CVFAPYFGSD  60
QGAARFAAVH KVFGASNVSK LLLHIPANRR QDAVVTITYE AQARLSDPVY GCVSTILALQ  120
QQVASLQSEL AIVQTQIMNS RYAMANAYHN ISQQQEQHIA ILQPSYSNNS SISNNNINLV  180
NNFNNSTTNI FDHHHQLHGS VTCTANNSPS CDPIHQLHDE EEEEEESHNP LAFTNHMFHS  240
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-393514310115LOB family transfactor Ramosa2.1
5ly0_B2e-393514310115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400038936
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-173HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-173HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347838.11e-180PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV35e-70LBD20_ARATH; LOB domain-containing protein 20
TrEMBLM1C1R41e-179M1C1R4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000578291e-180(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.19e-59LOB domain-containing protein 20
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]