PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400038946
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18221.7 Da    PI: 7.3879
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400038946genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.32.7e-15445748
                          HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                          + r vtfskRr+g++KKA+EL  +++ +va ++fs+tg+ y+
  PGSC0003DMP400038946  4 TSRMVTFSKRRKGLFKKAKELESMTGSRVASVVFSPTGRPYT 45
                          789***********************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-8149IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.105150IPR002100Transcription factor, MADS-box
CDDcd001209.49E-17145No hitNo description
PfamPF003197.7E-20245IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-14250IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-51227IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-52748IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MKETSRMVTF SKRRKGLFKK AKELESMTGS RVASVVFSPT GRPYTCGDVN SAIKQHFSTE  60
LLTSDCGDIN FAIKPHFAST RCMELLTSGL NSHDSDDVVF DVSLGSKSSS TPKRNGLRCW  120
VEGIDVEQYQ NLNQLLMLKQ QLEGTREKIA SIEELESFEA LFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400038946
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754405e-71HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081723.13e-69agamous-like MADS-box protein AGL29
TrEMBLM1C1S31e-118M1C1S3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000578441e-118(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-14AGAMOUS-like 29
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]