PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400038948
Common NameLOC107060704
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17257.5 Da    PI: 9.9014
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400038948genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.44.4e-141259249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +i  k+ r  tfskR++g++ KAeEL  L+  +v  ++fs+++  y+y
  PGSC0003DMP400038948 12 KITKKTARMATFSKRKKGLFRKAEELESLTSSRVTFVVFSPSDIPYTY 59
                          7899*************************************9998888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-13362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.371363IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-18471IPR002100Transcription factor, MADS-box
CDDcd001201.18E-18460No hitNo description
PRINTSPR004047.5E-12525IPR002100Transcription factor, MADS-box
PfamPF003197.5E-191259IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-122540IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-124061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGTGKKKIEI EKITKKTARM ATFSKRKKGL FRKAEELESL TSSRVTFVVF SPSDIPYTYG  60
DVNSIIKKHF SSCNRSEIST SVMNSHHSSY DVSGESSESK SSSTPKGNGL RGWVEDIDVE  120
GQNLNQLLML KEQLEGTRKK IVSNDSESFQ AFFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400038948
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164376.11e-110PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLM1C1S41e-108M1C1S4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000578491e-109(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.14e-11AGAMOUS-like 102
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]