PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400038950
Common NameLOC107060702
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 156aa    MW: 17329.9 Da    PI: 10.2627
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400038950genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.54.7e-151159149
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          k+i  k+ r v fskRr+g++KKAeEL  L+   v  i+fs+ ++ y+y
  PGSC0003DMP400038950 11 KKITKKTARMVAFSKRRKGLFKKAEELESLTSSHVTSIVFSPFDRPYTY 59
                          67999*************************************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-17362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.89363IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-18466IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-13525IPR002100Transcription factor, MADS-box
PfamPF003194.0E-191259IPR002100Transcription factor, MADS-box
CDDcd001206.32E-131960No hitNo description
PRINTSPR004043.0E-132540IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-134061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MGTGKKKIEI KKITKKTARM VAFSKRRKGL FKKAEELESL TSSHVTSIVF SPFDRPYTYG  60
DVNSVIKRHF PSCIRPEMST PVMNSHHSSS DVFGESSGSK LSSAPKGNGL RSWVEDIDVE  120
GCQNLNQLLM LKEQLEGTRK KIVSTDSESF QALFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400038950
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-143HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164374.11e-111PREDICTED: agamous-like MADS-box protein AGL23
TrEMBLM1C1S61e-110M1C1S6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000578531e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.14e-12M-type_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]