PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400038951
Common NameLOC102593570
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18551.2 Da    PI: 9.1894
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400038951genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.59.7e-151358348
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                          i  ++ r vtfskRr+g++KKA+E   +++ +va i++s+tg+ y+
  PGSC0003DMP400038951 13 IIKETSRMVTFSKRRKGLFKKAKEFESMTGSRVASIVLSPTGRPYT 58
                          556789************************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.539363IPR002100Transcription factor, MADS-box
SMARTSM004329.6E-17362IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-17463IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-12525IPR002100Transcription factor, MADS-box
PfamPF003194.0E-191258IPR002100Transcription factor, MADS-box
CDDcd001202.44E-141758No hitNo description
PRINTSPR004047.1E-122540IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-124061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGTGKKKIEI EKIIKETSRM VTFSKRRKGL FKKAKEFESM TGSRVASIVL SPTGRPYTCG  60
DVDYAIKRHF SNSRCMELLM SDMNSRDSNS NSDFNSNIVM YGETSGSKSS STPKRNNLRN  120
WVEGIDVEQC QNLNQLLMLK EQLEGTKEKI ASIEDVEAFE ALFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400038951
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-171HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347862.11e-119PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1C1S71e-117M1C1S7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000578551e-118(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.15e-11M-type_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]