PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400039149
Common NameLOC102594411
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 167aa    MW: 19040.4 Da    PI: 7.5097
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400039149genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.33.4e-132078563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                          ++ +r+++NRe+ArrsR RK++  + L+  v +++++N + + ++++++ +  ++++e+
  PGSC0003DMP400039149 20 RKRKRMISNRESARRSRMRKQKLSDDLTSQVNQFKEQNNQIATNINMMTHLFLNVEAEN 78
                          6789******************************************9998887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.3E-101268No hitNo description
SMARTSM003381.9E-151680IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.9211881IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.48E-112072No hitNo description
PfamPF001707.6E-102067IPR004827Basic-leucine zipper domain
CDDcd147022.02E-172171No hitNo description
PROSITE patternPS0003602338IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MASFTSGSSQ EDLQQVIDQR KRKRMISNRE SARRSRMRKQ KLSDDLTSQV NQFKEQNNQI  60
ATNINMMTHL FLNVEAENSI LRAQLVELNQ RLQSLNEIIS CTNSSRSLEK CTSTFGGSDI  120
HPTTICLQSP SNIAINYHHE LDDFLNPWNL LNVNQSIMAS PDSFMY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11940RKRKRMISNRESARRSRMRKQK
23239RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400039149
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343386.11e-120PREDICTED: bZIP transcription factor 53-like
TrEMBLM1C2801e-119M1C280_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000581871e-119(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.19e-39G-box binding factor 6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]