PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400039325

Common Name

LOC102604580

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YB

Protein Properties

Length: 137aa MW: 14927.5 Da PI: 6.5213

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400039325	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	167.3	2e-52	21	116	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 reqdr+lPianv+rimk++lP nakisk+aket+qecvsefi+fvtseasdkc++e+rkt+ngdd++wal+tlGf+dy +lk yl++y PGSC0003DMP400039325 21 REQDRLLPIANVGRIMKNILPPNAKISKEAKETMQECVSEFIGFVTSEASDKCRKERRKTVNGDDVCWALGTLGFDDYGGALKRYLHRY 109 89************************************************************************************* PP NF-YB 91 relegek 97 re egek PGSC0003DMP400039325 110 RESEGEK 116 **997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.9E-50	16	126	IPR009072	Histone-fold
SuperFamily	SSF47113	5.48E-38	23	130	IPR009072	Histone-fold
Pfam	PF00808	1.7E-26	26	90	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.0E-15	54	72	No hit	No description
PRINTS	PR00615	1.0E-15	73	91	No hit	No description
PRINTS	PR00615	1.0E-15	92	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MSQQNIGGAS SSNDEGAGSS REQDRLLPIA NVGRIMKNIL PPNAKISKEA KETMQECVSE 60 FIGFVTSEAS DKCRKERRKT VNGDDVCWAL GTLGFDDYGG ALKRYLHRYR ESEGEKVNQE 120 QAGGGSGSHQ PRNYLD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	7e-44	21	111	2	92	Transcription factor HapC (Eurofung)
4g92_B	7e-44	21	111	2	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400039325

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006342784.1	3e-98	PREDICTED: nuclear transcription factor Y subunit B-5-like
Swissprot	O82248	9e-59	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	M1C2L2	7e-97	M1C2L2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400058414	1e-97	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	4e-61	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400039325
Entrez Gene	102604580

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]