PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400039459
Common NameLOC102605338
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 269aa    MW: 28697.1 Da    PI: 5.8827
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400039459genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-15103150355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+ +l+g
  PGSC0003DMP400039459 103 FRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAAMALKG 150
                           89**9.55.6*********843...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-25102158IPR001471AP2/ERF domain
PROSITE profilePS5103219.44102158IPR001471AP2/ERF domain
SMARTSM003802.3E-26102166IPR001471AP2/ERF domain
CDDcd000184.82E-15103158No hitNo description
SuperFamilySSF541712.03E-17103159IPR016177DNA-binding domain
PfamPF008472.8E-9103150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MADSQNSTKS NQVIQPPHQS SESTKTPFNP TPPPPIPPPP APPPPPETHI QTTNTLLSKF  60
ENTNSTPKTV QLPNIIPATI MSSTSSGSSG SPSRPIGGKH AVFRGIRCRS GKWVSEIREP  120
RKTTRIWLGT YPTPEMAAAA YDVAAMALKG NDAVINFPGN INSYPSLPPS PAAADIRKAA  180
ATAAALMKIE TGETTSGTQP GTDDHQSSGS VHMMETRDHE YIDEEALFDM PNLLVDMAEA  240
MMVSPPRMSS PRSDDSPGHS DAENLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1593162576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400039459
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0108110.0AP010811.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0019O09, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358864.20.0PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ907e-50ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLM1C2X70.0M1C2X7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000585870.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.17e-33ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]