PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400039488
Common NameLOC102605040
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 298aa    MW: 32977.3 Da    PI: 8.708
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400039488genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027106128123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ C++ Fs++  L  H++ H
  PGSC0003DMP400039488 106 FSCSFCKREFSTSQALGGHQNAH 128
                           89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-497132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.58E-6103133No hitNo description
PROSITE profilePS5015711.552106133IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MNVFAMKKSC SSEASSISAT SEESHEIVTK TKKMKEKAVE GSQLKQHESS SAGVLLDLKV  60
HNNNNNINTN CSNLELKLFN STPARASESS NEATPKQRCS SDARTFSCSF CKREFSTSQA  120
LGGHQNAHKQ ERALAKRRNG LVDVVSSFGP PNYHPYYNPY SSFNSHIPFH TSFPTRSSLG  180
VQGDSSMIHK PTSYPTWPFF SGYNFRLNPK KWSSSSSSSS FFRTENVLGN NILGASLENS  240
QFENNNNAKG FNLMNSPINL DDSLDGNNHT KIGLGKEEAK RNNEEEEESK LDLNLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400039488
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364077.10.0PREDICTED: zinc finger protein 3-like
TrEMBLM1C3040.0M1C304_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000586250.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-17zinc-finger protein 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]