PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400039562

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

VOZ

Protein Properties

Length: 159aa MW: 17137.3 Da PI: 4.8358

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400039562	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	155.2	3.9e-48	53	148	1	93
VOZ 1 pppsaflgpkcalwdctrpaqgsewl...qdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaata 86 pppsaflgpkcalwdc+rpa gs+w+ qdycs +ha+la neg pg pv+rp gi+lkd+llf+alsak++gk+vg+pecegaata PGSC0003DMP400039562 53 PPPSAFLGPKCALWDCPRPAMGSDWCqksQDYCSDYHASLAPNEGYPGRPPVVRPMGIGLKDNLLFQALSAKAHGKDVGVPECEGAATA 141 89*********************944459****************************************************** PP VOZ 87 kspwnaa 93 kspwna+ PGSC0003DMP400039562 142 KSPWNAP 148 ****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MVNNTGVNNL GIATQLDYHS FDLHHEYDQQ YLPGFDALNL CLEDAMPPIH ISPPPSAFLG 60 PKCALWDCPR PAMGSDWCQK SQDYCSDYHA SLAPNEGYPG RPPVVRPMGI GLKDNLLFQA 120 LSAKAHGKDV GVPECEGAAT AKSPWNAPGE SSGAYLYF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400039562

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975522	0.0	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006361045.1	1e-107	PREDICTED: transcription factor VOZ1
Refseq	XP_006361046.1	1e-107	PREDICTED: transcription factor VOZ1
Refseq	XP_006361047.1	1e-107	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-49	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	M1C375	1e-114	M1C375_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400058735	1e-106	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	4e-52	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400039562

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]