PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400039575
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 227aa    MW: 24398.7 Da    PI: 9.7926
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400039575genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.4e-213282256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka+++a+++++g+
  PGSC0003DMP400039575 32 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDNAAREFRGA 82
                          6********.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-223290IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-323289IPR001471AP2/ERF domain
SMARTSM003801.0E-393295IPR001471AP2/ERF domain
CDDcd000186.04E-333289No hitNo description
PROSITE profilePS5103223.8283289IPR001471AP2/ERF domain
PfamPF008475.7E-143281IPR001471AP2/ERF domain
PRINTSPR003672.4E-113344IPR001471AP2/ERF domain
PRINTSPR003672.4E-115571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAPKEKIGAV TAAAAAAVMA VGKLNGISKE VHYRGVRKRP WGRYAAEIRD PGKKSRVWLG  60
TFDTAEEAAK AYDNAAREFR GAKAKTNFPP LQKEEDLKFP VKNEINRSPS QTSTVESSSP  120
VMVDSSSPLD LRLCGSIGGF NHNTVRFPIS GGGFTGAVPA VNHMYYLEAL ARAGVINLET  180
NRKKTVDFLG GGDSDTSTVI DFMRVDVKPT IAGLNLDLNF PPPENM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-222889163ATERF1
3gcc_A8e-222889163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00358DAPTransfer from AT3G15210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400039575
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0918750.0EF091875.1 Solanum tuberosum ethylene response factor 3 (ERF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305482.11e-151ethylene-responsive transcription factor 4-like
SwissprotQ9LW492e-41ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLM1C3871e-165M1C387_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000587511e-166(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.13e-27ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]