PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400039577
Common NameLOC102581816
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SBP
Protein Properties Length: 136aa    MW: 15555.2 Da    PI: 8.0713
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400039577genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.19.1e-4251127278
                           -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           Cqve+C+ad+ +ak+yh rhkvCe+h+kap+vl++gl+qrfCqqCsrfh+l efD++k+sCrrrLa+hnerrrk+++
  PGSC0003DMP400039577  51 CQVEDCTADMVNAKTYHCRHKVCEFHAKAPAVLIDGLRQRFCQQCSRFHQLAEFDDAKKSCRRRLAGHNERRRKSAH 127
                           **************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375759.6E-571135IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.101.6E-3344112IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.79548125IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-3849128IPR004333Transcription factor, SBP-box
PfamPF031107.0E-3351124IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MENSKWEGKR NMEEEDDEED ENAVEDTKRK RVLTRSGRKV SMGEGSRQPS CQVEDCTADM  60
VNAKTYHCRH KVCEFHAKAP AVLIDGLRQR FCQQCSRFHQ LAEFDDAKKS CRRRLAGHNE  120
RRRKSAHDSP GEGSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-35511241184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400039577
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-135HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361029.11e-96PREDICTED: squamosa promoter-binding protein 1-like
SwissprotQ387412e-54SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLM1C3892e-95M1C389_SOLTU; Squamosa promoter-binding-like protein
STRINGPGSC0003DMT4000587534e-96(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.11e-42squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]