PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400039767

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 344aa MW: 37284.5 Da PI: 8.788

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400039767	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.9	1.7e-11	288	332	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 +r +r++kNRe+A rsR RK+a++ eLe +v++L++ ++L+k+ PGSC0003DMP400039767 288 RRRKRMIKNRESAARSRDRKQAYTLELEAEVAKLKEIKQELQKKQ 332 689***********************************9998664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-7	284	341	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.3E-12	285	335	No hit	No description
PROSITE profile	PS50217	10.151	286	331	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.85E-9	288	334	No hit	No description
Pfam	PF00170	1.5E-9	288	335	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.69E-23	288	342	No hit	No description
PROSITE pattern	PS00036	0	291	306	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MGSYLNFKNF ADTSQPESSG NNSNFSLARQ SSIYSFTFDE LQSTCGLGKD FGSMNMDDLL 60 KNIEESQAFP SSAAAGGNLQ RQGSLTLPRT LSQRTVDEVW KDFQKESVIA NDVSGTGGSN 120 FGQRESTLGE MTLEEFLVRA GAVREDMQPA GYSNDVTFAS GFTQPSSSVT IAFQQATQNP 180 GHQIAGNNIF NVVSTTTSST QQPLFPKQTT VEFASPLQLG GSPGTRPPMS NPSANTSSVM 240 QGGVMTMPVK GVSPGNIDTS SLSPSPYACG EGGRGRRSCT SFEKVVERRR KRMIKNRESA 300 ARSRDRKQAY TLELEAEVAK LKEIKQELQK KQAEFIEKQK KQV*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MGSYLNFKNF ADTSQPESSG NNSNFSLARQ SSIYSFTFDE LQSTCGLGKD FGSMNMDDLL  60
KNIEESQAFP SSAAAGGNLQ RQGSLTLPRT LSQRTVDEVW KDFQKESVIA NDVSGTGGSN  120
FGQRESTLGE MTLEEFLVRA GAVREDMQPA GYSNDVTFAS GFTQPSSSVT IAFQQATQNP  180
GHQIAGNNIF NVVSTTTSST QQPLFPKQTT VEFASPLQLG GSPGTRPPMS NPSANTSSVM  240
QGGVMTMPVK GVSPGNIDTS SLSPSPYACG EGGRGRRSCT SFEKVVERRR KRMIKNRESA  300
ARSRDRKQAY TLELEAEVAK LKEIKQELQK KQAEFIEKQK KQV*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400039767

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB675692	0.0	AB675692.1 Solanum lycopersicum SlABF4 mRNA for ABA responsive transcription factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006352088.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Refseq	XP_006352090.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Swissprot	Q9M7Q5	1e-78	AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBL	M1C3P5	0.0	M1C3P5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400059040	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.2	4e-67	abscisic acid responsive element-binding factor 1

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400039767

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877]