PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400039768

Common Name

LOC102581652

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 367aa MW: 40064.8 Da PI: 9.1449

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400039768	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.5	4.5e-11	288	344	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke.leelkkevaklk 60 +r +r++kNRe+A rsR RK+a++ eLe +v++L++ ++L+k+ +e ++k+ ++l PGSC0003DMP400039768 288 RRRKRMIKNRESAARSRDRKQAYTLELEAEVAKLKEIKQELQKKqAEFIEKQKKQLL 344 689*************************************97651555566665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.4E-12	284	349	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.5E-12	285	343	No hit	No description
PROSITE profile	PS50217	10.151	286	331	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.08E-9	288	335	No hit	No description
CDD	cd14707	4.61E-23	288	342	No hit	No description
Pfam	PF00170	2.3E-9	288	346	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	291	306	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MGSYLNFKNF ADTSQPESSG NNSNFSLARQ SSIYSFTFDE LQSTCGLGKD FGSMNMDDLL 60 KNIEESQAFP SSAAAGGNLQ RQGSLTLPRT LSQRTVDEVW KDFQKESVIA NDVSGTGGSN 120 FGQRESTLGE MTLEEFLVRA GAVREDMQPA GYSNDVTFAS GFTQPSSSVT IAFQQATQNP 180 GHQIAGNNIF NVVSTTTSST QQPLFPKQTT VEFASPLQLG GSPGTRPPMS NPSANTSSVM 240 QGGVMTMPVK GVSPGNIDTS SLSPSPYACG EGGRGRRSCT SFEKVVERRR KRMIKNRESA 300 ARSRDRKQAY TLELEAEVAK LKEIKQELQK KQAEFIEKQK KQLLEKMNVP WENKLICLRR 360 TVTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MGSYLNFKNF ADTSQPESSG NNSNFSLARQ SSIYSFTFDE LQSTCGLGKD FGSMNMDDLL  60
KNIEESQAFP SSAAAGGNLQ RQGSLTLPRT LSQRTVDEVW KDFQKESVIA NDVSGTGGSN  120
FGQRESTLGE MTLEEFLVRA GAVREDMQPA GYSNDVTFAS GFTQPSSSVT IAFQQATQNP  180
GHQIAGNNIF NVVSTTTSST QQPLFPKQTT VEFASPLQLG GSPGTRPPMS NPSANTSSVM  240
QGGVMTMPVK GVSPGNIDTS SLSPSPYACG EGGRGRRSCT SFEKVVERRR KRMIKNRESA  300
ARSRDRKQAY TLELEAEVAK LKEIKQELQK KQAEFIEKQK KQLLEKMNVP WENKLICLRR  360
TVTGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400039768

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:16284313}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB675692	0.0	AB675692.1 Solanum lycopersicum SlABF4 mRNA for ABA responsive transcription factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006352088.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Refseq	XP_006352090.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Swissprot	Q9M7Q3	1e-85	AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6
TrEMBL	M1C3P7	0.0	M1C3P7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400059040	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA776	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	9e-72	abscisic acid responsive element-binding factor 1

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400039768
Entrez Gene	102581652

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Zhao Q, et al. Regulation and function of Arabidopsis AtGALK2 gene in abscisic acid response signaling. Mol. Biol. Rep., 2018. [PMID:24078097] Bao Y, et al. The tumor necrosis factor receptor-associated factor (TRAF)-like family protein SEVEN IN ABSENTIA 2 (SINA2) promotes drought tolerance in an ABA-dependent manner in Arabidopsis. New Phytol., 2014. 202(1): p. 174-87 [PMID:24350984] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Xie M, et al. AtWNK9 is regulated by ABA and dehydration and is involved in drought tolerance in Arabidopsis. Plant Physiol. Biochem., 2014. 77: p. 73-83 [PMID:24561249] Kim EY,Seo YS,Park KY,Kim SJ,Kim WT Overexpression of CaDSR6 increases tolerance to drought and salt stresses in transgenic Arabidopsis plants. Gene, 2014. 552(1): p. 146-54 [PMID:25234727] Zhang H, et al. The RING finger ubiquitin E3 ligase SDIR1 targets SDIR1-INTERACTING PROTEIN1 for degradation to modulate the salt stress response and ABA signaling in Arabidopsis. Plant Cell, 2015. 27(1): p. 214-27 [PMID:25616872] Baek D, et al. A Role for Arabidopsis miR399f in Salt, Drought, and ABA Signaling. Mol. Cells, 2016. 39(2): p. 111-8 [PMID:26674968] Bao Y, et al. Overexpression of the NDR1/HIN1-Like Gene NHL6 Modifies Seed Germination in Response to Abscisic Acid and Abiotic Stresses in Arabidopsis. PLoS ONE, 2016. 11(2): p. e0148572 [PMID:26849212] Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Li X, et al. Dual Function of NAC072 in ABF3-Mediated ABA-Responsive Gene Regulation in Arabidopsis. Front Plant Sci, 2016. 7: p. 1075 [PMID:27486475] Wang Z, et al. Overexpressing Arabidopsis ABF3 increases tolerance to multiple abiotic stresses and reduces leaf size in alfalfa. Plant Physiol. Biochem., 2016. 109: p. 199-208 [PMID:27721135] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Kerr TCC, et al. Ectopic expression of two AREB/ABF orthologs increases drought tolerance in cotton (Gossypium hirsutum). Plant Cell Environ., 2018. 41(5): p. 898-907 [PMID:28098349] Lyzenga WJ,Sullivan V,Liu H,Stone SL The Kinase Activity of Calcineurin B-like Interacting Protein Kinase 26 (CIPK26) Influences Its Own Stability and that of the ABA-regulated Ubiquitin Ligase, Keep on Going (KEG). Front Plant Sci, 2017. 8: p. 502 [PMID:28443108] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Kim HJ, et al. Confirmation of Drought Tolerance of Ectopically Expressed AtABF3 Gene in Soybean. Mol. Cells, 2018. 41(5): p. 413-422 [PMID:29754472]