PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400039949
Common NameLOC102591520
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 87aa    MW: 9800.08 Da    PI: 9.3634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400039949genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-0813531454
                          HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          d+i +  ++L++l+P+ + + +s K+s + +L+++++YI++L
  PGSC0003DMP400039949 13 DQIADLVSKLQQLIPEiR-NRRSDKVSASKVLQETCNYIRNL 53
                          6899999*********77.89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.353153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-91371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-61353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-91369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSRRSRSRI SDDQIADLVS KLQQLIPEIR NRRSDKVSAS KVLQETCNYI RNLHREVDGL  60
SERLSQLLES TDSDSAQAAI IRSLLM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400039949
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1398402e-78AC139840.1 Solanum demissum chromosome 5 clone PGEC323D8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238782.12e-53transcription factor PRE6-like
RefseqXP_006363238.12e-53PREDICTED: transcription factor PRE6-like
RefseqXP_015075714.12e-53transcription factor PRE6-like
SwissprotQ9LJX11e-38PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2G2VLX34e-52A0A2G2VLX3_CAPBA; Transcription factor PRE4
TrEMBLK4BWP74e-52K4BWP7_SOLLC; Uncharacterized protein
TrEMBLM1C4494e-52M1C449_SOLTU; Uncharacterized protein
STRINGSolyc05g007210.2.17e-53(Solanum lycopersicum)
STRINGPGSC0003DMT4000593457e-53(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.13e-40bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]