PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400039965

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YB

Protein Properties

Length: 156aa MW: 17444.7 Da PI: 4.3533

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400039965	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	76.6	3.7e-24	8	96	3	91
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 ++d+ lP a +++i+k++lP + ++++d+++++ +c +efi +++se+++ c+re+r+ti+++ +l al lGf +y+e++ + +++r PGSC0003DMP400039965 8 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIDCCVEFINLISSESNEVCNREERRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHR 96 6899***************************************************************************9987666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.6E-38	7	135	IPR009072	Histone-fold
SuperFamily	SSF47113	5.03E-34	9	139	IPR009072	Histone-fold
Pfam	PF00808	1.4E-20	11	76	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MDIVGRTKED ASLPKATMTK IIKEMLPPDV RVARDTQDLL IDCCVEFINL ISSESNEVCN 60 REERRTIAPE HVLKALEVLG FGEYIEEVYA AYEQHRLETV DTVRAGKCSN VAEMTEEEAL 120 AEQQRMFAEA RARMNGGVTV PSKQPDSEVD QNLNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	2e-34	9	131	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400039965

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	5e-77	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006345337.1	1e-111	PREDICTED: protein Dr1 homolog
Swissprot	P49592	1e-84	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A0V0H8J7	1e-110	A0A0V0H8J7_SOLCH; Uncharacterized protein
TrEMBL	M1C462	1e-110	M1C462_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400059368	1e-111	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3820	22	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	1e-88	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400039965

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]