PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400039985
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 218aa    MW: 24995.9 Da    PI: 5.1962
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400039985genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like28.43.6e-092347125
               G2-like  1 kprlrWtpeLHerFveaveqLGGse 25
                          k+rl+Wt+eLH+ F +av+qLGG+e
  PGSC0003DMP400039985 23 KERLKWTQELHDLFEKAVSQLGGPE 47
                          68*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-72166IPR009057Homeodomain-like
PfamPF143796.3E-1770114IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MPGKFREQPS SSMASNRSDC SSKERLKWTQ ELHDLFEKAV SQLGGPEIGK FERRSISEIL  60
PNFSVTAGAQ LNEALQMHMD AHKRLSDHLE VQRNLKIKLE AQGRFLERIM EEQKVCASGS  120
RPSCKSYSYS PLSLPSLCEE SESNVKELEV EYDSEFDISD CQLPRKRIRF EEDDGLLNHR  180
YNSTNNVTYS PQELEWTTLA NHQSSPYDLH ALYDYLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400039985
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-159HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071061.21e-138myb family transcription factor PHL7-like
TrEMBLM1C4771e-160M1C477_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000594001e-161(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101012026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-19G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]