PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040153
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 214aa    MW: 24898.6 Da    PI: 8.419
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040153genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.71.8e-26111170159
                           ---SS-EEEEEEE--TT-S.S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYG+K+vk+++ + r+YY+C+ +gC+vkk+ver+ +d +++++tYeg+Hnhe
  PGSC0003DMP400040153 111 LDDGYKWRKYGKKKVKSNTnYLRNYYKCSIRGCEVKKRVERDGHDSSYLITTYEGKHNHE 170
                           59**************885268*************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-2899170IPR003657WRKY domain
SuperFamilySSF1182901.57E-23105171IPR003657WRKY domain
PROSITE profilePS5081125.224106172IPR003657WRKY domain
SMARTSM007742.7E-29111171IPR003657WRKY domain
PfamPF031065.6E-21112170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MTNQNFSYNY QDNFLDQDFE FSSFLDHLLV DYVPTYNNSN NTPLSEINPS MHEISSSSAN  60
SASSTTSFYA TPPNINHLKE KSKVGIIKKE MIKKNERHVI AFSTKTQLEI LDDGYKWRKY  120
GKKKVKSNTN YLRNYYKCSI RGCEVKKRVE RDGHDSSYLI TTYEGKHNHE INSSIIYNHV  180
EADSEFELNF HRRGGKRVER DHGHDSSCVH YYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-23100171373WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040153
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754515e-90HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060567.11e-116probable WRKY transcription factor 51
TrEMBLM1C4K41e-156M1C4K4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000596731e-157(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA141921013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.13e-22WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]