PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040360
Common NameLOC102587577
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARF
Protein Properties Length: 651aa    MW: 74258.5 Da    PI: 5.3946
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040360genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.7e-22129229198
                           EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           f+k lt+sd  ++  l +p k a ++     + +++ s++l+ +d++g++W++k+ y+++++r+ lt+GW+ Fv +++L +gD vvF  
  PGSC0003DMP400040360 129 FCKCLTQSDIKSNWGLFVPLKDAVKCfppldMRQEKPSQELIATDLQGNEWRFKHAYQGQPRRHSLTNGWSTFVTSKKLLAGDLVVFL- 216
                           99****************************9555556779************************************************. PP

                           -SSSEE..EEEEE- CS
                    B3  85 dgrsefelvvkvfr 98 
                            ++++++l+v+++r
  PGSC0003DMP400040360 217 -RDETGKLHVGIRR 229
                           .569999*****98 PP
2Auxin_resp30.81.2e-11254313159
            Auxin_resp   1 aahaastksvFevvYnPra.stseFvvkvekvekalkvkvsvGmRfkmafetedsserrl 59 
                           a+ha++t+s F+v+++P   ++s+F+ +++k+ +  ++   vGm  +m+ e+edss+ r 
  PGSC0003DMP400040360 254 ASHAFATRSLFSVYHKPCYnKSSQFIMSLSKYFEGGNHGRGVGMISRMQHEGEDSSHVRR 313
                           689**************861678********************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-34122240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-28124232IPR015300DNA-binding pseudobarrel domain
CDDcd100178.46E-21128229No hitNo description
PfamPF023621.6E-19129229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464129231IPR003340B3 DNA binding domain
SMARTSM010192.2E-19129231IPR003340B3 DNA binding domain
PfamPF065076.4E-9254312IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MVDQPWFSQQ KYPNHMSFEG DDGLRREIWK VCSGSSLDVP KAGERVYYFP RLHVEQLEQS  60
SNQELIERLQ LSNLPPKMLC RVLHIRLLVE HETEEVYAEI RLLPNQDQNE PTAPDFSPLD  120
TPRPQFQSFC KCLTQSDIKS NWGLFVPLKD AVKCFPPLDM RQEKPSQELI ATDLQGNEWR  180
FKHAYQGQPR RHSLTNGWST FVTSKKLLAG DLVVFLRDET GKLHVGIRRL SYQRCSIGAS  240
TFSRQSVEGA LAVASHAFAT RSLFSVYHKP CYNKSSQFIM SLSKYFEGGN HGRGVGMISR  300
MQHEGEDSSH VRRTNDLDQI SLSQGQQTTN LMLEEDQYMQ DSEAVLDCAQ STMTDLEIRQ  360
QTTGSHNNVH CFSPVEDNGL QLHTAVAREN NEGSIPNDTV SIQTRDEDLY ELFEDFDFPD  420
SINTSLDTIA LDLGSDWFRS TLQEQEETIT PSHPNASEDH SRRTSSVLEH PTSFQVMSIS  480
TNPSQIPYEG PGRGDEQVPW GGYQVARRTL PILSRVVSRY PDSLVNFRVA SSILQSVYLE  540
ILAELVYFLN NLTIVNLSKD QFNVARQHIW DLKLSGIEIG WLENRLLHID EVFIMESLRQ  600
RRQALTRRME ETFKQLDGEL GCIDKELHEL SLKVGPNPPM RLHSVLEGLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A3e-872231217307Auxin response factor 1
4ldw_A3e-872231217307Auxin response factor 1
4ldw_B3e-872231217307Auxin response factor 1
4ldx_A4e-872231217307Auxin response factor 1
4ldx_B4e-872231217307Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5651290.0HM565129.1 Solanum lycopersicum auxin response factor 13-1 (ARF13-1) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163537.10.0PREDICTED: uncharacterized protein LOC102587577 isoform X1
TrEMBLM1C5200.0M1C520_SOLTU; Auxin response factor
STRINGPGSC0003DMT4000599990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1459378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.16e-97auxin response factor 11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]