PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040568
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 105aa    MW: 12472 Da    PI: 4.1311
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040568genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.34.1e-08134696128
                   NAM  96 kgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                           +++ +g+kk +v+y + + ++ ++t+W+m+e++l
  PGSC0003DMP400040568  13 TEKIIGIKKYFVYYiTTNIHEQVQTNWIMEEFHL 46 
                           6778**********655778889**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.645164IPR003441NAC domain
SuperFamilySSF1019412.09E-101362IPR003441NAC domain
PfamPF023651.7E-41546IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MNEPIILKNC GETEKIIGIK KYFVYYITTN IHEQVQTNWI MEEFHLKREN EKLLEWVVCR  60
VHESKNNSER ITCDDNDEIE LSALDEVFLS LDDDQEQEEI SFPY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040568
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-70HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345759.12e-70PREDICTED: NAC domain-containing protein 68-like
TrEMBLM1C5I61e-69M1C5I6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000602762e-70(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137851215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-15xylem NAC domain 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]