PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400040762

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 139aa MW: 15819.3 Da PI: 9.8444

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400040762	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00072	27	49	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H PGSC0003DMP400040762 27 FECKTCNRQFSSFQALGGHRASH 49 89**********99999998887 PP
2	zf-C2H2	10.6	0.0017	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F+ L H+r+H PGSC0003DMP400040762 72 HECSICGLEFPIGQALGGHMRRH 94 78*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.41E-9	25	94	No hit	No description
Pfam	PF13912	8.2E-13	26	51	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.2	27	49	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.242	27	54	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	29	49	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.4E-11	71	96	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.203	72	96	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.27	72	94	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MANYLLLFSR QENHFDTMVN NSPSRVFECK TCNRQFSSFQ ALGGHRASHK KPRLMGELNF 60 QLPISPPKPK THECSICGLE FPIGQALGGH MRRHRGILNE NNNKNIQVHH VVKKLKSPRV 120 LCLDLNLPPL ENDHLEFL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400040762

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC205681	1e-128	AC205681.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0025A19, complete sequence.
GenBank	HG975517	1e-128	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006345938.1	1e-98	PREDICTED: zinc finger protein ZAT11-like
Swissprot	Q681X4	2e-29	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	M1C622	8e-97	M1C622_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400060523	1e-97	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA366	24	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	3e-35	C2H2 family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400040762

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]