PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040958
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 407aa    MW: 46522.4 Da    PI: 6.6127
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040958genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15e-10111144437
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvke 37 
                            k  rr+++NReAAr+sR RKka++++Le+    
  PGSC0003DMP400040958 111 TKTLRRLAQNREAARKSRIRKKAYVQQLETSRVR 144
                           6889************************985444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.7E-5108168IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-8109156No hitNo description
PROSITE profilePS502178.565110154IPR004827Basic-leucine zipper domain
PfamPF001703.4E-7111145IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.9E-7112151No hitNo description
PROSITE patternPS000360115130IPR004827Basic-leucine zipper domain
PfamPF141446.1E-29204279IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDSSKNQISF INQHQFFHDP QQQQQQQMEN HKNHQISFGL SSTNPENFIS KENNGGAYDL  60
GELDQALFLY LDGQDPSSSS IQDQRQNNYG MRPPTLNIFP SQPMHIEPSS TKTLRRLAQN  120
REAARKSRIR KKAYVQQLET SRVRLSQLEH EIQRARSQGF HVGGNVLLGG DQGFQLINRT  180
NISSDAAVFD LEYARWLEEH HRLICELRNA VHEEQLQEDE LRIYVENCVV HYDNIMNLKG  240
MLAKSDVFHL VSGLWKSPAE RCFLWIGDFR PSELLKIIMC QIEALTENQL LGMCGLQKST  300
QEAEDALSQG LEALNQSLSD TIIASDALIL GNNNENMGNY MALAINQLST VEAFLRQADN  360
LRHQTIHRLL QILTTRQAAR CFIAIGDYFH RLRALSSLWL ARPRHE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040958
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2442861e-138AC244286.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence.
GenBankHG9755221e-138HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165945.10.0PREDICTED: transcription factor HBP-1b(c38)-like
SwissprotQ52MZ21e-163TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLM1C6K30.0M1C6K3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000608650.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.11e-150bZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]