PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040974
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 124aa    MW: 13219.8 Da    PI: 10.085
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040974genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-056183223
                          EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                          +Cp C+ +Fs+   L++H ++ H
  PGSC0003DMP400040974 61 QCPQCTLRFSSVTALVSHVQKvH 83
                          7******************9988 PP
2zf-C2H217.89.2e-0695117223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +Cp C+k F+++ +L+ H  + H
  PGSC0003DMP400040974  95 VCPRCSKGFRDPVSLVEHVEReH 117
                           7*****************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0176083IPR015880Zinc finger, C2H2-like
PfamPF138942.2E-46183No hitNo description
SuperFamilySSF576671.51E-561113No hitNo description
PROSITE patternPS0002806283IPR007087Zinc finger, C2H2
SMARTSM003557.294117IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.20394122IPR007087Zinc finger, C2H2
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MNFRTGSRKD EPKKAPATSS SSWASSFYKA AEAGIAKLST GRGQSSNATN HSGNANGQVE  60
QCPQCTLRFS SVTALVSHVQ KVHEKNGVMN LTVDVCPRCS KGFRDPVSLV EHVEREHKGT  120
SKA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040974
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-155HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351319.15e-84PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
RefseqXP_015165934.15e-84PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
RefseqXP_015165935.15e-84PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
SwissprotQ8VZ421e-29SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLM1C6L92e-86M1C6L9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000608872e-83(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.16e-31C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]