PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041027
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 352aa    MW: 39464.7 Da    PI: 8.6379
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041027genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.1e-18197251256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ ++tkeq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  PGSC0003DMP400041027 197 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 251
                           788899***********************************************98 PP
2HD-ZIP_I/II127.74.8e-41197286191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr 
  PGSC0003DMP400041027 197 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENKRLHKELQELR- 284
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 el 91 
                           +l
  PGSC0003DMP400041027 285 AL 286
                           55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.232193253IPR001356Homeobox domain
SuperFamilySSF466892.01E-18194262IPR009057Homeodomain-like
SMARTSM003896.9E-16195257IPR001356Homeobox domain
CDDcd000867.12E-15197254No hitNo description
Gene3DG3DSA:1.10.10.603.0E-17197251IPR009057Homeodomain-like
PfamPF000461.8E-15197251IPR001356Homeobox domain
PROSITE patternPS000270228251IPR017970Homeobox, conserved site
PfamPF021834.6E-10253287IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.1E-25253296IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MELALSLGGD NTPKPILFLE KSSSSSSSLH ENKVNKDVGF CMVFGKSCNE GEDEVGRKKR  60
SRNHQDIWSS SIDPSLQLDL IPFSHGVSKN TSSQLSFPWL SQNLATEPAG LTSGPALDMT  120
NRRQLVVAEE AEEGAALSSP NSEISSFQMN FPIYRNGKLI NMKKDQCERD RDNNRWGNIN  180
NYSCSRISDE ELDASARKKL RLTKEQSAFL EESFKEHNTL NPKQKLALAK QLNLRPRQVE  240
VWFQNRRART KLKQTEVDCE YLKKCCETLT EENKRLHKEL QELRALKSSQ PFYMQLPATT  300
LTMCPSCERV VTTSAITTIT TTTPATTTTT TVAASNTVAL HNHKLISVMT K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245253RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-158HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351350.20.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X1
SwissprotP466652e-87HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLM1C6R80.0M1C6R8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000609510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-70homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]